Research Article

A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome

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Science  31 May 2002:
Vol. 296, Issue 5573, pp. 1661-1671
DOI: 10.1126/science.1069193

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The high degree of similarity between the mouse and human genomes is demonstrated through analysis of the sequence of mouse chromosome 16 (Mmu 16), which was obtained as part of a whole-genome shotgun assembly of the mouse genome. The mouse genome is about 10% smaller than the human genome, owing to a lower repetitive DNA content. Comparison of the structure and protein-coding potential of Mmu 16 with that of the homologous segments of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12, 16, 21, and 22. Gene content and order are highly conserved between Mmu 16 and the syntenic blocks of the human genome. Of the 731 predicted genes on Mmu 16, 509 align with orthologs on the corresponding portions of the human genome, 44 are likely paralogous to these genes, and 164 genes have homologs elsewhere in the human genome; there are 14 genes for which we could find no human counterpart.

  • * To whom correspondence should be addressed. E-mail: richard.mural{at}

  • Present address: TIGR Center for the Advancement of Genomics, 1901 Research Boulevard, Suite 600, Rockville, MD 20850, USA.

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