The DNA Damage Road Map

Science  03 Dec 2010:
Vol. 330, Issue 6009, pp. 1327-1328
DOI: 10.1126/science.1199862

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If you were on your way to a new country, you would pack a map to help you find the major cities, roads, and interesting places to explore. Recently, researchers have created similar maps to help them start unraveling the complex architecture of a cell. These maps are created by measuring genetic interactions, specifically the effect that a mutation in one gene has on the phenotype of a mutation in a second gene (see the figure). Using novel genetic tools for studying budding yeast (1) and automated technology, investigators can now systematically and rapidly measure these genetic interactions (epistasis) for all pairs in gene subsets of interest (about 400 to 800 genes). The resulting E-MAPs (epistasis miniarray profiles) (2) have helped chart interactions for a diverse array of cellular processes, including the early secretory pathway, chromosome function, signaling pathways, and RNA processing (3, 4). These E-MAPs, however, have all have been collected from cells grown under the same condition: in a rich growth medium. But just as a snowstorm can block some roads and force changes in traffic, changing environmental conditions can cause cells to rewire their genetic networks, necessitating the drawing of a new map. On page 1385 of this issue, Bandyopadhyay et al. (5) describe the creation of just such a condition-specific E-MAP and a novel method for analyzing it.