News this Week

Science  12 Oct 2012:
Vol. 338, Issue 6104, pp. 176
  1. Around the World

    1 - Boolardy Station, Australia
    New Radio Telescope Takes Aim
    2 - Parma, Italy
    European Food Agency Pans Contested GM Study
    3 - Tilburg, the Netherlands
    Stapel Under Investigation by Dutch Prosecutors

    Boolardy Station, Australia

    New Radio Telescope Takes Aim


    “Exotic objects that push the boundaries of our knowledge of the physical laws,” are the target of the Australian Square Kilometre Array Pathfinder (ASKAP), says astrophysicist Brian Boyle, of Australia's Commonwealth Scientific and Industrial Research Organisation.

    The $400 million ASKAP, completed last week at the Murchison Radio-astronomy Observatory in Western Australia, comprises 36 12-meter-diameter antennas. With its wide view of the sky and high-speed data acquisition, Boyle says, “in one day ASKAP will gather more information than is in all the radio astronomy archives around the world today.” During its first 5 years of operation, the observatory will take a census of galaxies within 2 billion light-years of Earth, study cosmic magnetic fields, and search for black holes.

    Boyle says scientific observations will start by the end of the year with the first results likely within 12 months. And then, beginning in 2016, an additional 60 dishes will turn ASKAP into part of the world's largest radio telescope—the Square Kilometre Array (Science, 1 June, p. 1085).

    Parma, Italy

    European Food Agency Pans Contested GM Study

    An expert panel convened by the European Food Safety Authority (EFSA) has dismissed as “inconclusive” a controversial study claiming to find that rats fed genetically modified maize developed tumors at a higher rate than control animals (Science, 28 September, p. 1588). The study “is of insufficient scientific quality to be considered as valid for risk assessment,” the group concluded in a 4 October report. But EFSA invited the study's lead author, Gilles-Eric Séralini of the University of Caen in France, to provide the agency with more information by 12 October. “We will put our raw data on a public Web site,” Séralini told Science. He says he'd like to see EFSA do the same with the data they used to approve the GM variety. Meanwhile, a separate review by Germany's Federal Institute for Risk Assessment also found the study wanting, and French authorities are expected to offer their views on 20 October.

    Tilburg, the Netherlands

    Stapel Under Investigation by Dutch Prosecutors



    Disgraced Dutch psychologist Diederik Stapel is under investigation by the Dutch Public Prosecution Service and the Fiscal Information and Investigation Service, according to media reports in the Netherlands.

    NRC Handelsblad reported last week that investigators are trying to establish whether Stapel defrauded the government by collecting grant money for research he did not carry out and made false statements in his accounts of how the money was spent.

    Stapel resigned from Tilburg University in 2011 after an investigation revealed that he made up the results in many of his eye-catching social psychology studies (Science, 4 November 2011, p. 579).

    So far, 25 of his papers have been retracted; a commission is still investigating others. NRC Handelsblad reports that Stapel received €2.2 million in grants from the Netherlands Organisation for Scientific Research, and university funds may be part of the inquiry as well. Officials will decide whether to prosecute Stapel once the investigation is complete, which could take months.

  2. Random Sample


    Schools in England are failing girls who want to study physics, says a new report from the United Kingdom's Institute of Physics. Almost half (49%) of mixed state-funded high schools did not have a single girl continuing physics beyond age 16, according to 2011 exam results. Girls are two-and-a-half times more likely to continue with physics if they attend a single-sex school.

    Wikipedia Edit-a-Thon for Female Scientists


    Search Wikipedia for “computer programming” and you will discover Ada Lovelace, a 19th century English mathematician whose notes expanding on Charles Babbage's description of the first general-purpose mechanical computer have earned her widespread recognition as the world's first computer programmer. Lovelace remains one of few historical female scientists to win such distinction for her work—a problem that the Royal Society in London hopes to remedy on Wikipedia in an “edit-a-thon” event on 19 October. Fifteen female editors will create or expand Wikipedia articles on illustrious yet unsung female scientists using archives from the Royal Society's library.

    When Fanged Dwarf Dinosaurs Roamed the Earth


    Long before Triceratops stomped the earth, a family of dinosaurs called heterodontosaurs scampered about the supercontinent Pangaea armed with vampirelike fangs. Some paleontologists argued that the teeth showed the creatures ate insects or small animals as well as plants. Others claimed the fangs were mostly for show, used to spar with rivals or scare predators. Now, a 60-centimeter-tall heterodontosaur called Pegomastax africanus, described online last week in ZooKeys, may settle the debate. Microscopic analysis of tooth wear, and the reconstruction of a close cousin, suggest Pegomastax used its choppers to nip and spar, and not for wholesale meat-eating.

  3. Newsmakers

    Ten Scientists Receive Genius Grants


    The John D. and Catherine T. MacArthur Foundation last week announced the winners of its annual MacArthur Fellowships, otherwise known as Genius Grants, including 10 scientists. The $500,000 awards are unusual in that there is no public nomination process. A private committee reviews anonymous nominations, and the foundation's president and board of directors select the final winners. The awardees don't know they are in the running until they receive a congratulatory phone call from the foundation.

    Awardee Terry Plank, a geochemist at Columbia University who studies the intersection of hydrology and volcanology, received the “famous phone call out of the sky” while driving to pick her son up from school. “I'm still in shock that someone said, ‘Here's half a million dollars, no strings attached,’” she says. “It's better than the lottery.” Plank plans to spend the money on some riskier science experiments that might otherwise never receive funding.

    See the full list of winners at

  4. Aftershocks in the Courtroom

    1. Edwin Cartlidge*

    An Italian judge will soon decide whether 30 people died because seven experts downplayed the risk of a major earthquake in L'Aquila in 2009.

    Deadly toll.

    L'Aquila's 2009 earthquake killed 309 people and ruined the city's Medieval center.


    L'AQUILA, ITALY—“Stay calm. See you tomorrow morning.” Those were the last words that Linda Giugno heard from her brother Luigi, at about 1 a.m. on 6 April 2009. Both lived in the central Italian town of L'Aquila, and Linda had phoned Luigi, a forester, because she was frightened by the latest in a long series of small- and medium-sized tremors that had shaken the town over the previous 3 months. Luigi said he didn't think there was any danger, and that there was no need for him to wake up his wife, who was due to give birth later that day, and their 2-year-old son.

    A little more than 2 hours later, at 3:32 a.m., L'Aquila was struck by an earthquake with a moment magnitude of 6.3. Luigi, his wife, son, and unborn daughter were crushed to death as the 18th century building in which they lived collapsed—four of the quake's more than 300 fatalities.

    Linda Giugno told her awful tale from the witness stand in a packed, silent courtroom here in October 2011—one of the first of many moving testimonies in a controversial manslaughter trial that has gripped L'Aquila and scientists around the world.

    On trial are seven men—four scientists, two engineers, and a government official—who participated in a meeting of an expert panel of Italy's Civil Protection Department (DPC) known as the National Commission for the Forecast and Prevention of Major Risks, which met on 31 March 2009 in L'Aquila to assess the ongoing series of tremors.

    After the group adjourned, two members gave a press conference, accompanied by local officials. On that occasion, prosecutors say, they gave L'Aquila's inhabitants the mistaken impression that they had nothing to fear, and as a result, some people who would otherwise have fled their homes during subsequent tremors stayed inside—and were killed on 6 April. Indeed, when the prosecutor asked Linda Giugno why her brother was so sure there would be no destructive earthquake, her answer was clear: Experts quoted on TV news reports had said that there would be no tremors stronger than those already experienced.

    The trial in L'Aquila has drawn huge international attention, as well as outrage and protests. In 2010, more than 4000 scientists from Italy and around the world signed an open letter to Italian President Giorgio Napolitano, calling the allegations “unfounded,” because there was no way the commission could reliably have predicted an earthquake. Alan Leshner, CEO of AAAS (the publisher of Science) called the indictments “unfair and naïve” in a 2010 letter to Napolitano.

    Yet as the trial unfolded here over the past year, a more complex picture has emerged. Prosecutors didn't charge commission members with failing to predict the earthquake but with conducting a hasty, superficial risk assessment and presenting incomplete, falsely reassuring findings to the public. They have argued in court that the many tremors that L'Aquila experienced in the preceding months did provide at least some clues about a heightened risk.

    Meanwhile, a recorded telephone conversation made public halfway through the trial has suggested that the commission was convened with the explicit goal of reassuring the public and raised the question of whether the scientists were used—or allowed themselves to be used—to bring calm to a jittery town.

    The trial is now in its final weeks; more than 100 witnesses have testified, including geophysicists, engineers, public officials, psychologists, an anthropologist, as well as many friends and relatives of the victims. On 24 and 25 September, the prosecution presented its closing arguments in speeches totaling about 13 hours and asked for 4-year prison sentences for each of the seven defendants; this week, the defendants' lawyers were scheduled to start delivering their closing arguments. Finally, it will be up to a single judge, 43-year-old Marco Billi, to decide. His verdict is due by 23 October.

    Tense and nervous

    L'Aquila, the capital of the Abruzzo region, is in one of Italy's most seismically active areas. It lies practically on top of a fault that forms part of a larger system following the Apennine mountain chain for most of the length of the country. The town was struck by major earthquakes in 1349, 1461, and 1703—the latter the most lethal one, killing an estimated 2500 people. In 1985 and 1995, L'Aquila experienced so-called swarms, large numbers of fairly small tremors taking place over several weeks. They caused nervousness—but no major shock occurred.

    Another swarm took place in the first few months of 2009, with tremors gradually becoming more frequent and more powerful (see graphic). They made the townsfolk increasingly tense and nervous, says geologist Antonio Moretti of the University of L'Aquila. That tension, he says, was compounded by the predictions of Gioacchino Giuliani, a technician at the National Institute of Nuclear Physics near L'Aquila.

    Giuliani says he can predict earthquakes by measuring increased emissions of radon gas from Earth—a theory that has been under investigation for decades but that most seismologists dismiss. Giuliani reportedly predicted that a strong tremor would strike the town of Sulmona, an hour's drive southeast of L'Aquila, on 29 March. The prediction triggered panic but it was wrong, and on 31 March, Giuliani was reported to the police for issuing an unjustified alarm, leading him to stop making public pronouncements on earthquakes.

    House of justice.

    With L'Aquila's old courthouse heavily damaged, the trial is being held in this makeshift building.


    Against this backdrop, the local magnitude of the tremors increased abruptly to 4.1 on 30 March, and Guido Bertolaso, then head of DPC, decided to convene the Major Risks Commission. Normally, the commission meets in Rome, but this time Bertolaso asked the group to travel to L'Aquila. The meeting's aim, according to a DPC press release issued on 30 March, was to “provide the citizens of Abruzzo all the information available to the scientific community on the seismic activity of the last few weeks.”

    Just ahead of the meeting, one of the commission members had already sounded very reassuring notes in an interview with local television station TV Uno. Bernardo De Bernardinis, then–deputy head of DPC and a hydraulic engineer, had said that the tremors posed “no danger” and that “the scientific community continues to confirm to me that in fact it is a favorable situation.” The ongoing tremors helped discharge energy from the fault, De Bernardinis explained. Trial witnesses later said this was particularly reassuring because it suggested the danger decreased with each tremor. When the interviewer suggested that people could relax by pouring themselves “a good glass of wine,” De Bernardinis replied “absolutely,” and recommended a good Montepulciano.

    The meeting itself kicked off at about 6:30 p.m. at the headquarters of Abruzzo's regional government and finished within an hour. Afterward, De Bernardinis gave a press conference along with the commission's then–vice-president, volcanologist Franco Barberi of the University of Rome (Roma Tre). They were joined by two officials who had attended the meeting: L'Aquila Mayor Massimo Cialente and the regional councilor responsible for civil protection, Daniela Stati.

    The tenor of the statements they made, as reported in newspaper articles and television reports, was: Stay calm; it's not possible to predict earthquakes, but we don't expect a major quake is on the way. The newspaper Il Tempo reported De Bernardinis as saying that an increase in the magnitude of the tremors was not expected, while TV network Abruzzo24ore quoted Cialente as saying that “there should be absolutely no risk” of substantial damage to buildings.

    Traditionally, prosecutors argued, people in L'Aquila had been trained by their parents to leave their homes as soon as they felt the ground shake, to avoid the effects of any further, potentially larger, tremors. That was what happened on the day before the meeting, when the magnitude-4.1 event happened; many people gathered near the castle or in one of the town's squares until they felt confident enough to go home. But the meeting of the Major Risks Commission changed many minds, contends the prosecution. “It was as if we were anesthetized, like someone had removed our primitive fear of the earthquake,” the court was told by local surgeon Vincenzo Vittorini, whose family stayed inside the night of 5–6 April. “After that damned meeting, they instilled in us the idea that something terrible couldn't happen.”

    When the earthquake struck, with its epicenter little more than 3 kilometers from the town center, Vittorini lost his wife and daughter. The quake left 309 people dead, at least 1500 injured, and more than 65,000 were forced to leave their homes. More than 3 years later, the town seems frozen in time; most of the city center is abandoned, many of its streets still cordoned off, with some houses completely destroyed. Many older buildings are kept in a straitjacket of metal braces, while more modern apartment blocks have gaping holes that in some cases reveal pieces of furniture that are still standing.

    Trail of tremors.

    L'Aquila had experienced hundreds of minor quakes in early 2009. A key question in the trial: Did they suggest a big one might be coming? (The timing of individual spikes is based on GMT and is approximate.)


    A swarm's significance

    With the original courthouse badly damaged in the quake, the trial is being held in a simple, bright blue building on an industrial estate several kilometers outside the town. Inside, there is barely enough room for the defendants and a small army of lawyers to sit, leaving standing room only for many friends and relatives of the victims and journalists.

    For Fabio Picuti, the main prosecutor in the trial, the earthquake was the start of an unusual foray into a complex scientific field. Picuti is from L'Aquila and has spent most of his career investigating local organized crime, but he tells Science that he has studied the science of the case extensively. He argues that had the commission members properly analyzed the seismic and other data at their disposal on 31 March 2009, and conveyed the results of that analysis accurately to the public, 30 of the victims of the earthquake would not have stayed indoors on the night of 5–6 April.

    In session.

    Public prosecutor Fabio Picuti (left) talks to Judge Marco Billi (right).


    In his 509-page indictment, Picuti acknowledges that the experts were right to assert that predicting earthquakes is impossible, and that making buildings resistant is the best way to reduce risks. But he argues that these statements were of little use. He told the court that the minutes of the meeting in fact show the defendants to have made a series of “banal and self-contradictory” statements, many of which were “at best scientifically useless” or, worse, “misleading.”

    Central to the prosecution's case is the swarm and what it implied about the risk of an impending quake. The scientists on the commission thought the swarm neither increased nor decreased the probability of a major earthquake. “A swarm, of whatever kind and of whatever duration, is never, and I underline never, a precursor of large seismic events,” seismologist Giulio Selvaggi of the National Institute of Geophysics and Volcanology (INGV) told local newspaper Il Centro 3 weeks before the quake. (Selvaggi is one of three defendants who weren't officially on the commission but are regarded as members by the prosecution because they attended the 31 March meeting and had relevant expertise.) Barberi, who was the commission's vice-president, is quoted in a draft version of the meeting minutes as saying that “a seismic sequence doesn't forecast anything.”

    In their testimony, the defendants stuck to that opinion. Enzo Boschi, a geophysicist at the University of Bologna who for decades was the most prominent Italian geophysicist, told the court: “I refuse to admit that a seismic sequence, whether consisting of big or small tremors, can tell us a big earthquake is on its way.” Boschi's lawyer, Marcello Melandri, adds that the experts did not undervalue the significance of the swarm. Melandri tells Science that the commission “did not reassure” during its meeting, adding that “it wasn't said that the earthquake wouldn't happen or that it would happen.”

    Picuti pointed out during his summing up that L'Aquila's 1461 and 1703 quakes were also preceded by foreshocks—and argued that the defendants knew this and should have taken it into consideration. “Why,” he asked, “didn't another commission member say: ‘No, Professor Barberi, we can't make such a definite statement; let's instead talk in terms of probability—that very rarely a seismic swarm can evolve into a strong tremor’? If this had been written in the minutes, I certainly wouldn't be spending my time here discussing this.”

    As Picuti also pointed out in the courtroom, the defendants' position appears to differ from that of the International Commission on Earthquake Forecasting for Civil Protection (ICEF), which DPC set up in the wake of the L'Aquila quake to review the state of earthquake forecasting. In its report, issued in May 2011, ICEF said the occurrence of small or medium tremors does tend to increase chances of a large quake in the near future, even if the absolute probability remains low.

    ICEF Chair Thomas Jordan, an earth scientist at the University of Southern California in Los Angeles, tells Science that the idea that swarms tell us nothing at all “is not quite right.” Many swarms do not lead to main shocks, but a few do, he says. “The frequency of main shocks is greater during swarm activity than it is without swarms,” he explains. “That's where you get the notion that there is a probability increase.”

    Apparent inconsistencies

    Risk assessment.

    Draft minutes of the 31 March 2009 meeting.


    Picuti also pounced on apparent inconsistencies in the commission's assessment. One was a statement made during the meeting by Boschi. According to the meeting's draft minutes, Boschi had said that the “periods of return [of major earthquakes in Abruzzo] are on the order of 2–3000 years. … It is improbable that in the short term there will be a tremor like that of 1703, even if it can't be ruled out absolutely.” Yet Boschi co-authored a 1995 study that estimated the probability of an earthquake of at least 5.9 in magnitude occurring in the L'Aquila area before 2015 at 1—in other words, it was certain to happen. “The head of Italy's seismologists said [in the meeting] that it was improbable that there would be a major earthquake,” Picuti told the court. “It's a shame he didn't also inform them of his own study.”

    Also under the prosecutor's spotlight was a statement made by Barberi during the meeting. According to the draft minutes, he said tremors within a swarm tend to have the same magnitude, “and it is very improbable that in the same swarm the magnitude will increase.” But Christian Del Pinto, a seismologist who attended the meeting as an observer, pointed out in testimony during the trial that the magnitude of the tremors had already jumped up—on 30 March, the very day before the meeting. It was therefore wrong to rule out further sudden rises in magnitude, Del Pinto said. Picuti told the court that Del Pinto's observation was “dramatically important,” because that phrase, reported by the press, led people to their deaths. “Hence the judgment of guilt,” he said.

    Barberi's lawyer, Francesco Petrelli, says he can't address Barberi's comment before making his final arguments in court, which he was due to do as Science went to press. But he says the minutes don't provide a word-by-word account of what was said in the meeting, and that “you have to read the text in its entirety and not in its single phrases.”

    The public prosecutor also tackled what was perhaps the most controversial statement made by a member of the Major Risks Commission. In his now-infamous comments before the meeting, De Bernardinis said that the swarm was actually “a favorable situation” because it caused a “continuous discharge of energy,” implying that it decreased the risk of a major quake. Other members of the commission told the court that this idea was not correct. Selvaggi, for example, described it as “a bit like an urban legend,” because the energy released by smaller tremors is insignificant compared to that given off in a damaging earthquake. But Picuti argued that the commission's experts effectively sanctioned the notion when Barberi asked the other scientists for their opinion on this specific point. Based on the draft minutes, Picuti told the court that “none of them said a word.”

    Chorus without soloists

    In the course of the trial, new evidence also shed light on why the meeting was held in the first place—and played a role in attempts to shift the blame.

    In January, La Repubblica released the bombshell recording of a telephone call made the day before the commission's meeting. In it, then–civil protection head Bertolaso tells councilor Stati that he was convening the commission “not because we are frightened and worried” by the swarm but because “we want to reassure the public.” Bertolaso described the meeting as “more of a media operation.”

    Boschi told the court that all Bertolaso apparently wanted to hear from the commission was that earthquakes can't be predicted. “I imagined something more in-depth” from the meeting, Boschi told the court. The judge asked Boschi why he hadn't objected to the discussion's narrow scope. “For me, the head of the situation is the head of the civil protection,” Boschi replied, “and if he asks me to say this and that, I will say it.”

    Moretti, the L'Aquila geologist, believes the mounting tension in the town forced Bertolaso to try to calm the public, and that the scientists were therefore constrained to make reassuring statements. “The scientists were forced towards an evidently mistaken decision and then abandoned,” he says. But Paolo Scandone, a geologist at the University of Pisa and a commission member in the 1980s, believes that the panel should have insisted on sticking to the science. “The scientists perhaps weren't lucid enough to say no to the administrators,” he says.

    Similarly, opinions vary on where the responsibility lies for De Bernardinis's controversial comments. Melandri tells Science that De Bernardinis's comments were “his words” and not those of the commission. “The prosecutor has not distinguished between the different commission members,” Melandri says.

    But Picuti argued that De Bernardinis reflected the position of the commission as a whole, describing the commission as “a chorus without soloists, an organism that speaks with a single voice.” De Bernardinis's words “correspond exactly” with what was said during the meeting, Picuti told the court. “I realized during the course of the trial that De Bernardinis is the victim, the victim of the seismologists,” he said.

    In his own testimony, De Bernardinis told the court that had the other commission members given him different advice about the possibility of a major quake, he would have taken action. “If they had said to me that the risk had increased,” he said, “I would have called Bertolaso [the civil protection department's head] straightaway.”

    Fonts of true knowledge

    Even if the commission's statements were wrong or misleading, for Judge Billi to convict the defendants of manslaughter, he must be satisfied that there was a direct causal link between their conduct and the victims' decision to stay indoors on the night of 5–6 April 2009. That's why a minor battle in the trial focused on the evidence for such a causal relationship. Testifying for the defense, neurologist Stefano Cappa of San Raffaele Hospital in Milan said that a direct link is impossible to prove because press reports and minutes relaying the commission's conclusions “typically transmitted information that was ambiguous, generic and nonspecific.”

    The prosecution brought in Antonello Ciccozzi, an anthropologist at the University of L'Aquila, who argued in a written report that to the townspeople, the commission was made up of “maximum scientific authorities” and fonts of “true knowledge” not available to other people. Maurizio Cora, a lawyer who lost his wife and two daughters when their house collapsed, agreed. He told the court that he and his family awaited the statements of the commission “like manna” from heaven; on the evening of 5 April, together they “reasoned” on the basis of the commission's statements that there would be no more powerful tremors than those already experienced. Reassured, they went to bed.

    If Billi does find the defendants guilty, there will almost certainly be an appeal, which, with two or even three stages, could last up to 6 years, according to Fabio Alessandroni, a lawyer representing relatives and friends of the victims seeking damages. Given their different roles, only some defendants may be found guilty, Alessandroni says, and sentences may vary. Fines, which would probably be paid by the state rather than the defendants, could amount to tens of millions of euros, Alessandroni says. Bertolaso is now being investigated separately for manslaughter because of his role.

    Jordan, the chair of the earthquake forecasting commission ICEF, does not believe anybody is guilty of manslaughter. De Bernardinis, he says, “made statements that were scientifically incorrect,” but he argues that he and his colleagues were engaged in a difficult balancing act—to communicate subtleties about changing seismic risk while trying to counter baseless predictions. “I think with hindsight they didn't get that balance right, but I know from personal experience that it's very tricky in those situations to say the right kind of things.”

    Willy Aspinall, a professor of natural hazards and risk science at the University of Bristol in the United Kingdom, is more critical. He says the commission was hindered by an overcritical view of earthquake prediction that currently dominates the field. Past failures to predict earthquakes have resulted in “mainstream seismology setting its face against any idea of prediction,” to the extent, Aspinall says, that many in the field also oppose the use of the less ambitious probabilistic forecasting. “Unfortunately, the experts thought it was evacuate or nothing,” he maintains. “In L'Aquila, people are used to sleeping in cars, and they shouldn't have been dissuaded from that in my view.”

    But Aspinall worries about the effect that a guilty verdict could have on scientific advice concerning natural hazards. He was chief scientist at the Volcano Observatory for the Caribbean island of Montserrat when an eruption killed 19 people in 1997. The enquiry into the deaths didn't result in a criminal trial, but “the upshot is that the most sensible and best informed scientists are shying away” from giving advice on the island, he says. “If the L'Aquila scientists are found guilty,” he reckons, “we could end up with the charlatans and the mavericks.”

    The best way to avoid such problems in the future, Jordan says, is to clearly delineate the role of the scientists and that of authorities responsible for civil protection. Experts should provide “carefully constructed probabilistic statements” regarding the risk, he says, which decision-makers would then use to choose the best course of action.

    Vittorini, the surgeon who lost his wife and daughter, says he isn't looking for the indicted to end up in prison either. The trial was “not a witch hunt,” he says. Its aim was to find out what mistakes were made and who was responsible, so that perhaps a similar tragedy can be prevented. “We need to change the mentality,” he says. “We need to make sure that people don't [look to] reassure.”

    • * Edwin Cartlidge is a science writer in Rome.

  5. The Seven Defendants

    Members of Italy's National Commission for the Forecast and Prevention of Major Risks in 2009


    Franco Barberi. Volcanologist at the University of Rome (Roma Tre), the commission's then–vice-president. Said during the meeting that the magnitude of tremors is very unlikely to increase in a swarm.

    Enzo Boschi. Then-president of Italy's National Institute of Geophysics and Volcanology (INGV) and the country's most prominent geophysicist. Said the seismic swarm provided no signal of an impending major earthquake.

    Gian Michele Calvi. Seismic engineer at the University of Pavia and president of the European Centre for Training and Research in Earthquake Engineering. Said future tremors shouldn't seriously damage buildings.

    Claudio Eva. Seismologist at the University of Genova.

    Regarded As Members of the Commission By Virtue Of Their Presence at the 31 March Meeting and Their Expertise


    Bernardo De Bernardinis. Hydraulic engineer, then–deputy head of Italy's Civil Protection Department (DPC). Said minor tremors were “favorable” and suggested relaxing with a glass of Montepulciano.

    Mauro Dolce. Seismic engineer, director of DPC's seismic risk office. Produced the meeting's official minutes.

    Giulio Selvaggi. Seismologist at INGV and director of the National Earthquake Centre until he resigned in June of this year. Insists he was not a member of the commission but simply accompanied Boschi.

  6. Human Evolution

    Turning Back the Clock: Slowing the Pace of Prehistory

    1. Ann Gibbons

    New work suggests that mutations arise more slowly in humans than previously thought, raising questions about the timetable of evolutionary events.

    Time warp.

    The molecular clock used to date events in our prehistory may run more slowly than had been thought, and at variable speeds.


    Timing is everything, especially in human evolution. For the past 45 years, researchers have used the number of mutations in DNA like a molecular clock to date key chapters in the human evolutionary story, such as the dawn of humankind millions of years ago and the exodus of modern humans from Africa in the past 100,000 years.

    Now it seems that the molecular clock ticks more slowly than anyone had thought, and many dates may need to be adjusted. Over the past 3 years, researchers have used new methods to sequence whole human genomes, allowing them to measure directly, for the first time, the average rate at which new mutations arise in a newborn baby. Most of these studies conclude that the mutation rate in humans today is roughly half the rate that has been used in many evolutionary studies since 2000. “Together, these papers make a convincing case that the human sequence mutation rate is substantially less than the one previously used,” says Harvard University population geneticist David Reich, co-author of one recent study. “As a result, genetic estimates of dates for ancient events are going to be older than previously reported.”

    The question now is how much older? Three new studies have taken a stab at providing an answer, trying to apply the slower mutation rates to major events in human evolution. In the past month, they have published a range of dates that sometimes fit with evidence from the fossil record—and that are sometimes way off, particularly for events further back in time. Some researchers suggest that the molecular clock may not keep steady time across primates, and that it also has slowed over millions of years. This is confusing researchers who rely on those rates to study genetic diseases and the evolution of humans and primates.

    “The mutation rates are so up in air,” said paleogeneticist Svante Pääbo of the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, in August, when his team published big margins of error—from 170,000 to 700,000 years ago—for the date when our ancestors split from Neandertals and their close cousins, the Denisovans. As a result, the timing of some events in human origins is now “very murky,” says paleoanthropologist Chris Stringer of the Natural History Museum in London. The ambiguity in the mutation rate affects a host of evolutionary and disease-related analyses, says paleoanthropologist John Hawks of the University of Wisconsin, Madison: “We can't figure out how things happened if we don't know when they happened.”

    Fossil time

    Seeking synchronicity.

    Some dates derived using the new, slower mutation rate match fossils—and some don't.

    For the past 15 years, researchers have estimated the speed of the molecular clock by counting the mutational differences between humans and primates in matching segments of DNA, then using different species' first appearances in the fossil record to estimate how long it took those mutations to accumulate. For example, the fossils of the oldest known orangutan ancestor are about 13 million years old, so DNA differences between humans and orangutans had about that long to accumulate. By doing similar calculations in many segments of DNA in various primates, researchers calculated an average rate of about one mutation per billion base pairs per year for humans and other apes.

    When researchers plugged this rate into their equations, most got dates between 4 million and 6 million years ago for the split between the ancestors of humans and chimps. That dovetails pretty well with fossils identified as the earliest known hominins, or members of the human family, such as Sahelanthropus, which lived 6 million to 7 million years ago; Orrorin, which lived 6 million years ago; and Ardipithecus, which lived 4.4 million to 5.8 million years ago (Science, 15 February 2002, p. 1214).

    As the rate became widely accepted, researchers used it to date milestones such as when the first modern humans migrated out of Africa—less than 70,000 years ago—and when they parted ways with Neandertals and Denisovans.

    But this method of calculating the mutation rate has drawbacks. For starters, it assumes that the fossil dates accurately record the first appearance of a species, but that can change with a new find. Second, there are no fossils of our closest living relatives: chimps and gorillas. Third, the method assumes that species split at the same time as their genes diverged, but in fact, genetic separation can be millions of years earlier than species divergence. Finally, the method assumes that mutation rates are similar across apes, although factors such as generation time—the average number of years between generations—affect the rate.

    The first sign that something was amiss came in 2003, when a study tracking genes that cause hemophilia, muscular dystrophy, and other diseases in parents and children found slower mutation rates than expected.

    With the recent advent of high-throughput sequencing methods, geneticists finally have been able to sequence enough whole genomes to calculate directly the number of mutations between trios of two parents and their child in large numbers of families. Eight studies in the past 3 years (and the 2003 study) have estimated a slower mutation rate, according to a review published online on 11 September in Nature Reviews Genetics by geneticists Aylwyn Scally and Richard Durbin of the Wellcome Trust Sanger Institute in Hinxton, U.K. Several studies sequenced the complete genome, such as one in August that measured the mutation rate in 78 trios of Icelandic parents and children. Other papers report the mutation rate in disease-causing genes, including one study that sequenced genes in 14,000 individuals.

    The Icelandic study found that on average, every newborn baby has 36 spontaneous new mutations, those not inherited from either parent. These rare, so-called de novo mutations are just a tiny proportion of the 3 billion nucleotide bases in the genome, but this is the source of all variation in humans. It is the raw material for all human evolution—for better or worse, because most new mutations are deleterious. “All of the diversity in the human genome was once upon a time de novo mutation,” says geneticist Kári Stefánsson of deCODE Genetics in Reykjavík, co-author of two new studies in Icelanders. “We have evolved through these new mutations.”

    Remarkably, all the studies got about the same rate: 1.2 × 10−8 mutations per generation at any given nucleotide site. That's about 1 in 2.4 billion mutations per site per year (assuming an average generation time of 29 years)—and that's less than half of the old, fossil-calibrated rate. “It really does look good; all the studies are pointing in the same direction, averaged over many individuals,” says evolutionary biologist Michael Lynch of Indiana University, Bloomington, co-author of one of the studies on the mutation rate.

    If geneticists know the average rate, they can measure whether it is higher in genes that play a part in diseases such as autism, schizophrenia, or prostate cancer that are on the rise, Stefánsson says. And then they can begin to tease out what factors might change the rate in those genes.

    Pushing back time

    A slower-ticking molecular clock also has major implications for evolution. For example, the slow clock suggests that the ancestors of modern humans and Neandertals diverged about 400,000 to 600,000 years ago, rather than 272,000 to 435,000 years ago. This fits nicely with fossils of Homo heidelbergensis, which date between 350,000 and 600,000 years ago and are thought to be ancestral to Neandertals. Scally and Durbin also revised the dates for modern human evolution, such as pushing back the timing of a dramatic population bottleneck from 100,000 to 120,000 (rather than 60,000 to 80,000) years ago, and the emergence of modern humans out of Africa to 90,000 to 130,000 (rather than less than 70,000) years ago.

    Researchers who study fossils and stone tools older than 100,000 years in the Middle East and North Africa say this boosts the case that these ancient people might be ancestral to modern humans rather than a failed exodus out of Africa. But others who have tied the bottleneck or out-of-Africa migration to events such as a major volcanic eruption about 70,000 to 75,000 years ago are likely to be less pleased. “Some people will be happy with these rates, and some will not,” Hawks says.

    Push back a little further in time, and the fit with fossils becomes strained. For example, the Neandertal dates seem on the early side to Stringer: “We probably do not have clear Neandertal features before about 400,000 years ago—or at a real push, 500,000 years,” he says. “So, I do not see good reason—yet—for major revision” of the dates for Neandertal and modern human origins.

    What's more, the new rate slows the pace of evolution in apes to a downright crawl (see table). It puts the split of humans and chimpanzees, for example, at between 8.3 million years ago and 10.1 million years ago—far too early, given current fossil dates. The split of the lineages leading to orangutans and the African apes, including humans, goes back to 34 million to 46 million years ago, Reich says. “A human-orangutan split at 40 million years is absolutely crazy,” says paleoanthropologist David Begun of the University of Toronto, St. George, in Canada, who notes that fossils of likely orangutan ancestors date from 9 million to 13.9 million years ago.

    Recognizing these problems, Scally and Durbin propose a fix: They endorse a 30-year-old idea that the mutation rate was faster early in primate evolution, then slowed in the African apes, and perhaps slowed even more in human evolution—the so-called hominoid slowdown. This idea is backed by evidence that as body size gets bigger in various mammals, their generation times get longer, slowing per-year mutation rates, Scally says. It's an intriguing idea that leads to a better fit between fossils and Scally's dates. “Some kind of slowdown certainly occurred in apes,” Reich says. But he cautions that “the magnitude of slowdown required to reconcile these dates is extreme.”

    Indeed, a separate study recently challenged the link between bigger bodies and longer generation times. After a decade of work recording the age of parents at the birth of 226 chimpanzees and 105 gorillas in the wild in Africa, Linda Vigilant of the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, and an international team reported in August that gorillas have a shorter generation time—about 19 years—than their smaller human and chimp cousins, who average about 29 years (thanks to older fathers) and 25 years, respectively.

    Vigilant's team, whose work was published in the Proceedings of the National Academy of Sciences, went a step further, multiplying their new generation times by the new, slower mutation rate to date events in evolution. Their result also pushes back the human-chimp split to 7 million to 13 million years ago, which just fits with the oldest fossils, Vigilant says. But those dates assume that generation times haven't changed in millions of years. “A big question is, what were generation times in the past?” Vigilant says.

    Reich, meanwhile, is a co-author on yet another study that used a different method and got an intermediate rate. He says it's possible that the new methods aren't picking up all the mutations, and so could be getting an artificially slow rate. So he, Stefánsson, and graduate student James Sun of the Massachusetts Institute of Technology in Cambridge analyzed mutation rates in 2500 microsatellites—small pieces of DNA that vary in the number of times they repeat—in 85,000 people in Iceland. Microsatellites have a higher rate of mutation than DNA nucleotides, so it is easier to detect all their new mutations. The team came up with a way to convert the microsatellite mutation rates back to a base pair mutation rate, which they estimate at 1 in 1.2 billion to 1 in 2.0 billion per year.

    That's also a better fit with fossils, putting the split between humans and chimpanzees at about 3.7 million to 6.6 million years ago. This would create a different kind of problem, however: The oldest fossils vying to be the earliest members of the human family, such as Sahelanthropus at 6 million to 7 million years ago, might be too old to be hominins. So no matter how researchers calculate the mutation rate directly, they can't accommodate all the fossil dates.

    Rate adjustment

    Just in time?

    Different mutation rates make this 6-million to 7-million-year-old fossil of Sahelanthropus too young, too old, or just the right age to be an ancestor of humans.


    All these complicating factors show that researchers are still exploring what alters the mutation rate, and by how much. Yet another twist may be the age of fathers at conception. In a landmark study of 78 trios of parents and offspring in Iceland, Stefánsson and Augustine Kong, also of deCODE Genetics, found that older fathers pass on more mutations to their offspring, because mistakes are made as aging DNA is copied to produce sperm over men's lifetimes. (Older mothers don't pass on more mutations, because eggs are all produced before birth.) The effect is large, causing two extra mutations per year of father's age. That means that 36-year-old dads pass on twice as many mutations as 20-year-old dads, according to a report in Nature in August. So an increase in the average age of fathers might have sped up the molecular clock. “It's difficult to extrapolate back like this,” Stefánsson says. “You have to recognize that there are going to be flawed estimates.”

    Other researchers are trying to explore what affects the mutation rate by studying parts of the genome with rates that are much above or below the average. “There is a lot of variability in the rate at which DNA evolves from one part of the genome to another,” says geneticist Katherine Pollard of the University of California, San Francisco, although she adds that such hot spots are such a small percentage of the chimp and human genomes that they should not affect the average mutation rate.

    And in a forthcoming paper, Lynch and his colleagues show that big genomes and big populations both slow the mutation rate in model organisms such as bacteria, yeast, plants, and fruit flies. This underscores how risky it is to assume that the mutation rate was constant in humans and apes, because so little is known about what might speed up or slow the clock over great sweeps of time. A bottleneck that cut the number of breeding adults to 10,000 before modern humans swept out of Africa would be expected to speed up the rate, Lynch says. But did the rapid expansion of modern human populations after the invention of agriculture then slow the rate? To be surer about extrapolating the rate across the apes, researchers need to calculate the mutation rate directly in chimp and gorilla parents and their offspring, as they have done for humans, Lynch says. But even when that work is done, the modern rate in these small, endangered ape populations may be faster than it was in larger ancestral populations.

    Thus, although both geneticists and paleoanthropologists are attuned to the fact that the human mutation rate today is slower than previously believed, it's still unclear how much slower it is, and what that means for timing events in our past. For now, “the question remains open—what is the true value of the mutation rate,” Reich says. And “to do evolutionary analysis, you want to calibrate our clock properly.”

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