Supplemental Data


Abstract
Full Text
A High-Resolution Radiation Hybrid Map of the Human Genome Draft Sequence
Michael Olivier, Amita Aggarwal, Jennifer Allen, Annalisa A. Almendras, Eva S. Bajorek, Ellen M. , Shannon D. Brady, Jannette M. Bushard, Valerie I. Bustos, Angela Chu, Tisha R. Chung, Anniek De Witte, Mirian E. Denys, Rakly Dominguez, Nicole Y. Fang, Brian D. Foster, Robert W. Freudenberg, David Hadley, Libby R. Hamilton, Tonya J. Jeffrey, Libusha Kelly, Laura Lazzeroni, Michelle R. Levy, Saskia C. Lewis, Xia Liu, Frederick J. Lopez, Brent Louie, Joseph P. Marquis, Robert A. Martinez, Margaret K. Matsuura, Nedda S. Misherghi, Jolanna A. Norton, Adam Olshen, Shanti M. Perkins, Amy J. Perou, Chris Piercy, Mark Piercy, Fawn Qin, Tim Reif, Kelly Sheppard, Vida Shokoohi, Geoff A. Smick, Wei-Lin Sun, Elizabeth A. Stewart, J. Fernando, Tejeda, Nguyet M. Tran, Tonatiuh Trejo, Nu T. Vo, Simon C. M. Yan, Deborah L. Zierten, Shaying Zhao, Ravi Sachidanandam, Barbara J. Trask, Richard M. Myers, and David R. Cox

Supplementary Material

Supplemental Table 1. G3 RH map of the human genome, version 4.0.
Column 1 - Chromosome
Column 2 - Unique STS position in chromosome
Column 3 - SHGC STS name
Column 4 - Unmapped STS that has an RH vector identical to the designated ordered STS
Column 5 - LOD score between designated STS and the next ordered STS distal

To view Supplemental Table 1 in Excel format click here


Supplemental Table 2. TNG RH map of the human genome, version 1.0. Each chromosome in the map is represented as a different table.
Column 1 - Chromosome
Column 2 - Unique STS position in chromosome
Column 3 - SHGC STS name
Column 4 - Unmapped STS that has an RH vector identical to the designated ordered STS
Column 5 - Genbank DNA accession that contains the STS sequence as determined by BLAST analysis (see text)
Column 6 - LOD score between designated STS and the next ordered STS distal
Column 7 - STS contig LOD >3.
Column 8 - cR 10,000 distance between designated STS and the next ordered STS distal
Column 9 - Estimated cumulative kbp distance based on cR 10,000 distances (see text)
Column 10 - Order of designated STS on the G3 version 4.0 RH map (see Web table 2)
Column 11 - Cytogenetic position as determined in reference (29) in text

Supplemental Table 2 can be viewed in Excel format by using the following links:
chromosome 1 | chromosome 2 | chromosome 3 | chromosome 4 | chromosome 5 | chromosome 6 | chromosome 7 | chromosome 8 | chromosome 9 | chromosome 10 | chromosome 11 | chromosome 12 | chromosome 13 | chromosome 14 | chromosome 15 | chromosome 16 | chromosome 17 | chromosome 18 | chromosome 19 | chromosome 20 | chromosome 21 | chromosome 22 | chromosome X | chromosome Y | 


Supplemental Table 3. Order of 20,030 SHGC STSs uniquely positioned in the working draft sequence of the human genome [reference (1) in text], the Celera sequence of the human genome [reference (30) in text], and the TNG RH map version 1.0 (Web table 1).
Column 1 - Chromosome
Column 2 - SHGC STS name
Column 3 - Order in working draft sequence
Column 4 - Order in Celera DNA sequence
Column 5 - Order in TNG RH map, version 1.0

To view Supplemental Table 3 in Excel format click here