Supporting Online Material


Abstract
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A Role for Peroxisomes in Photomorphogenesis and Development of Arabidopsis
Jianping Hu, Maria Aguirre, Charles Peto, José Alonso, Joseph Ecker, and Joanne Chory

Supporting Online Material

Supplemental Table 1. Examples of genes whose abnormal expression in det1 is restored by ted3 in the dark. Values shown are fold changes in expression relative to wild type.
Accession No.Putative Gene Productdet1ted3 det1
L41245thionin (Thi2.2)236.930.6
M20308chalcone synthase (CHS)54.41.6
AJ250341beta-amylase enzyme (ct-bmy gene)50.98.1
AC006282putative glucosyl transferase48.71.6
AAD20710pathogenesis related48.716.7
U84259flavonol synthase47.81.1
U61231cytochrome P450 (CYP89A2)43.32.9
AF064064flavanone 3-hydroxylase (F3H)40.2-1.2
X67816Eli3-137.93.4
CAB37539cinnamyl-alcohol dehydrogenase ELI3-237.53.4
X72022pathogenesis related35.620.1
AAD26481constance like B box zinc finger36.516
AAC00607rippening induced28.52.1
Z97342putative beta-amylase274.6
AAC25517similar to GA-regulated pro2 (GAST1)25.26.9
AAC83044similar to glycoprotein EP (s locus)25.22.8
AJ250341beta-amylase24.63.4
AAD17371similar to arginases20.85.6
Y18227blue copper binding-like protein20.15.5
AL035709squalene epoxidase-like19.52.8
AAD23681plastidic aldolase19.416.8
CAA16685endoxyloglucan transferase-like protein187.8
AAB71476similar to RPS-2 disease resistance protein17.97.3
AAD03445methione sulfoxide reductase like (msrA)17.41.6
AJ131464nitrate transporter16.35.1
AF023167adenosine-5 -phosphosulfate reductase (APSR)15.41.2
U38416ferulate-5-hydroxylase (FAH1)14.94.5
CAB38204cytochrome P450-like14.51
L27158omega-3 fatty acid desaturase (fad8)14.14.2
AAD32792putative alcohol dehydrogenase12.81.7
AAD20151putative glucosyl transferase12.4-1
CAB37533glycine hydroxymethyltransferase like12.77.2
X97484putative phosphate permease11.25.6
U96045APS reductase (PRH)111
Z97339indole-3-acetate beta-glucosyltransferase like10.84.2
AAC83044similar to glycoprotein EP110.71.1
AAD30627Similar to indole-3-acetate beta-glucosyltransferase10.6-1.2
AAC95203putative tropinone reductase10.6-1
AF054617one helix protein (OHP)10.64.5
AF1060884-coumarate:CoA ligase 310.31.2
CAB36854disease resistance like, receptor kinase10.11.1
AAD23676putative cell division inhibitor102.2
CAA17540similar to sigma 70 operon9.71.1
CAA17540mixed elicitor induced9.7-1.1
AL035709endo-xyloglucan transferase-like9.64.1
AAD43620disease resistance like9.45.8
AAC19308myc-like transcriptional factor9.32.6
U70616ADP glucose pyrophosphorylase small subunit9.23.6
Z46823steroid sulfotransferase9.31.2
AAF99741lecithin-cholesterol acyl transferase(LCAT1)92.9
Y11829hsp88.18.91.2
AF062590peroxisomal-3-keto-acyl-CoA thiolase 1 8.9-1
AF134132early light-inducable protein (Elip)8.7-1.2
AF188334Toll/interleukin-1 receptor-like protein (TIR)8.6-2
M86358chalcone isomerase8.52.5
Z97342disease resistance RPP5 like8.52.2
AL023094homeodomain-like8.53.4
CAB40757glutathione peroxidase like8.41
AAC95204tropinone reductase8.41.9
AAD22297purple acid phosphatase precursor8.42.1
U40856AIG18.4-1
AAD12002calcium binding protein8.41.8
AAC98029auxin induced zinc binding dehydrogenase8.44.6
U75201germin-like8.25.9
CAB42912protein 1 PSII8.27.2
AAB64044endochitinase82.4
Z49777isoflavonoid reductase81.8
M64115glyceraldehyde-3-phosphate dehydrogenase B subunit (GapB)87.4
Z95751MYB7.93.7
AAC24180replication protein A17.82.3
U30476expansin At-EXP17.83.6
AAD03448glutathione-regulated potassium efflux system protein7.71.8
X99808chloroplast FtsH protease7.61.9
AAC95192putative glutathione-s-transferase7.6-1.9
AAC35230phosphate cotransporter7.64.3
AAD10163putative retroelement protein7.52.1
AAB60905ACC1 homolog7.51.3
AAD23055calmodulin binding ion channel7.41.5
L43080pEARLI 17.42.7
CAB51215PEX117.44.8
U44133violaxanthin de-epoxidase precursor (AVDE1)7.33
AAD30584putative prenyltransferase7.31.6
M35868ferrodoxin precursor73.8
AACC95202putative tropinone reductase73.1
AAB87111cytochrome P45071.6
Z97048R2R3 MYB6.91.6
M65137rRNA6.92.1
AL078620cytochrome P450-like6.92
AF026167ankyrin repeat protein6.5-1.8
AAC31228putative glycine dehydrogenase6.72.8
AF089710disease resistance protein RPP86.64.8
S45911glyceraldehyde-3-phosphate-dehydrogenase subunit GapB 6.56.2
L23968lipoxygenase (Lox2)6.4-1.1
AAD32921putative GDSL-motif lipase/hydrolase6.41.4
CAB38817fructose-bisphosphate aldolase 6.43.7
AF026167protein kinase6.41.7
AF127664NBD-like 6.4-1.1
AF007778trehalose-6-phosphate phosphatase (AtTPPA)6.32.1
D85339hydroxypyruvate reductase6.37.4
AAC28198similar to fibrillin6.31.6
AAC67365lipid transfer protein6.22.9
AAC32234ripening associated protein kinase6.21.3
U77347lethal leaf-spot 1 homolog (Lls1)6.11.2
CAA16930TMV resistance protein N-like 6.11.5
AAC23773putative acetone-cyanohydrin lyase6.11.9
AAD15363En/Spm like5.9-1.3
AAC72875 ABC15.9-1.7
CAB36747acyl carrier-like protein5.93.1
AJ238804lipid transfer protein 5.92.9
Z99707hydroxynitrile lyase like5.91.5
AAB64339FKBP type peptidyl-prolyl cis-trans isomerase5.82.1
AAC95207putative tropinone reductase5.83.1
AJ131392alternative oxidase5.81.1
CAA18476serine/threonine kinase-like5.81.8
CAB43970putative beta-glucosidase5.72.2
AAD14475DEAD box RNA helicase (RH22)5.7-1.8
AAD20099glutamate decarboxylase (dehydration stress)5.7-1
Y10555CONSTANS like 1 (COL1)5.73.4
AAD15594cystein proteinase 5.61.1
Y08568trehalose-6-phosphate synthase.5.62.5
Z68495Mg chelatase subunit H (CHLH)5.62.6
CAA22974Proline-rich APG-like5.66.8
AAD14529putative ribose 5-phosphate isomerase5.52.3
AF144386thioredoxin f25.52.3
AJ222644asparaginyl-tRNA synthetase5.51
AAD29796auxin-regulated5.53.6
AAB87114auxin response GH3 like5.51.4
AAC97998ACC oxidase5.43.7
AAC27411nodulin like5.41.3
AAC79134putative disease resistance, NBS-LRR5.31.5
AJ002399monosaccharide transporter STP35.3-1.1
AJ243705ferredoxin-NADP+ reductase precursor (petH gene)5.33.8
L14845chloroplast stromal cyclophilin (ROC4)5.31.9
AAD15344similar to PHZF, catalyzing hydroxylation of phenazine-1-caboxylic acid5.2-1.5
CAB39628cytochrome c5.21.4
X65541carbonic anhydrase5.11.2
AJ245632psaH2 (PSI)5.14.4
AAD31572putative xyloglucan endo-transglycosylase5.12.5
AF135455SPA15.13.3
AAC67364putative nonspecific lipid transfer52.2
AAC20729ftsH chloroplast protease52.3
CAB38269UDP rhamnose-anthocyanidin-3-glucose rhamnosyltransferase like51.2
M98456 recombination and DNA-damage resistance protein (DRT112)54
AAC27170Hevea ethylene-responsive like protein54.3
X98925stromal ascorbate peroxidase3.3-2.5
AJ131206microbody NAD-dependent malate dehydrogenase3.72.9
AL022023catalase32
AAC78545late embryogeneis abundant M17 protein, stress induced-15.3-3.6
U43489xyloglucan endotransglycosylase-related protein (XTR7)-14-1.8
AF166352alanine:glyoxylate aminotransferase 2 homolog (AGT3)-12.3-1.1
X91913oleosin type3 protein-11.7-7.9
X98543endo-1,4-beta-glucanase-11.2-3.1
AAC34333branched chain amino acid aminotransferase-10.71.1
AAD15406putative cysteine proteinase inhibitor B-10.7-2.7
M83534isocitrate lyase-9.9-1.7
X82624putative name-glucosidase -9.3-1.1
AL049876disease resistance response-9.2-1.3
AJ222713nap, in elicited cell culture-9-1.4
AAC27834putative disease resistance protein-8.91.3
X98809peroxidase ATP5a-8.71.6
AAD25763putative berberine bridge enzyme-8.6-1.1
U49076IAA20-8.4-2.8
U59467aromatic rich glycoprotein JP630 (JP630)-8-1.8
U59467aromatic rich glycoprotein JP630 (JP630)-8-1.8
U49075early auxin-induced (IAA19)-8-1.6
AAC26690cytochrome P450-7.4-1.8
D64155aldehyde decarbonylase-7-3
D64155aldehyde decarbonylase-7-3
CAB37531heat shock protein 70 like-6.7-2.5
CAA20568stress condition-6.41.7
CAB36850RNA binding-6.4-1.8
U15683gibberellin-regulated (GASA4)-6.4-1.4
CAB43877deletion treated-6.2-1.5
AAC62135zinc finger protein-6.21.4
U43486xyloglucan endotransglycosylase-related protein (XTR4)-6.1-1.3
AAC67338putative MAP kinase-5.9-2
AL096882drought-inducible cysteine proteinase RD21A-5.81.1
U18048IAA6-5.8-1.9
AL035521fatty acid elongase-5.6-1
AL096882drought-inducible cysteine proteinase RD21A-5.5-1
AL022373putative auxin-induced protein-5.3-2.5
X98316peroxidase, prxr4-5.3-1
AAD22126putative pectinesterase-5.3-1.6
AF040632IAA17/AXR3-1-5.3-1.8
AAB95283putative anthocyanin 5-aromatic acyltransferase-5.2-1.6
AAC16938putative kinase-5.2-1.6
AAD20423RAS family GTP binding protein-5.1-1.6
AAC35239putative flavonol 3-O-glucosyltransferase-5.1-1.5
AAC98035similar to aldehyde dehydrogenase-5.1-1.4
AAD24368putative disease resistance response protein-5.1-1.5
Z97338cytochrome P450 like protein-5.1-1.6
U73781histone H1-3 (His1-3)-5-1.6
CAB37514farnesylated protein (ATFP6)-5-1.3
X98316peroxidase prxr4-4.4-1
L40954oleosin-4.1-2.6
X91918oleosin type4 protein-4.5-3.6
X98321peroxidase prx9-3.9-1.1
U97684peroxidase precursor RCI3A-3.3-1.3
X98319peroxidase prxr7-3-1.7
AF166351alanine:glyoxylate aminotransferase 2 homolog (AGT2)-3.1-1.1
U74610glyoxylase II-3-1
AF053345fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1)-3-1.6