Research Article

The Ecoresponsive Genome of Daphnia pulex

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Science  04 Feb 2011:
Vol. 331, Issue 6017, pp. 555-561
DOI: 10.1126/science.1197761

Article Information

vol. 331 no. 6017 555-561

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History: 
  • Received for publication September 14, 2010
  • Accepted for publication December 16, 2010
  • .

Author Information

  1. John K. Colbourne1,*,
  2. Michael E. Pfrender2,,
  3. Donald Gilbert1,3,
  4. W. Kelley Thomas4,
  5. Abraham Tucker3,4,
  6. Todd H. Oakley5,
  7. Shinichi Tokishita6,
  8. Andrea Aerts7,
  9. Georg J. Arnold8,
  10. Malay Kumar Basu9,,
  11. Darren J. Bauer4,
  12. Carla E. Cáceres10,
  13. Liran Carmel9,§,
  14. Claudio Casola3,
  15. Jeong-Hyeon Choi1,
  16. John C. Detter7,
  17. Qunfeng Dong1,,
  18. Serge Dusheyko7,
  19. Brian D. Eads1,3,
  20. Thomas Fröhlich8,
  21. Kerry A. Geiler-Samerotte5,,
  22. Daniel Gerlach11,#,
  23. Phil Hatcher4,
  24. Sanjuro Jogdeo4,**,
  25. Jeroen Krijgsveld12,††,
  26. Evgenia V. Kriventseva11,
  27. Dietmar Kültz13,
  28. Christian Laforsch14,
  29. Erika Lindquist7,
  30. Jacqueline Lopez1,
  31. J. Robert Manak15,‡‡,
  32. Jean Muller16,§§,
  33. Jasmyn Pangilinan7,
  34. Rupali P. Patwardhan1,∥∥,
  35. Samuel Pitluck7,
  36. Ellen J. Pritham17,
  37. Andreas Rechtsteiner1,¶¶,
  38. Mina Rho18,
  39. Igor B. Rogozin9,
  40. Onur Sakarya5,##,
  41. Asaf Salamov7,
  42. Sarah Schaack3,17,
  43. Harris Shapiro7,
  44. Yasuhiro Shiga6,
  45. Courtney Skalitzky15,
  46. Zachary Smith1,
  47. Alexander Souvorov9,
  48. Way Sung4,
  49. Zuojian Tang1,***,
  50. Dai Tsuchiya1,
  51. Hank Tu7,##,
  52. Harmjan Vos12,†††,
  53. Mei Wang7,
  54. Yuri I. Wolf9,
  55. Hideo Yamagata6,
  56. Takuji Yamada16,
  57. Yuzhen Ye18,
  58. Joseph R. Shaw1,19,
  59. Justen Andrews1,3,
  60. Teresa J. Crease20,
  61. Haixu Tang1,18,
  62. Susan M. Lucas7,
  63. Hugh M. Robertson21,
  64. Peer Bork16,
  65. Eugene V. Koonin9,
  66. Evgeny M. Zdobnov11,22,
  67. Igor V. Grigoriev7,
  68. Michael Lynch3,
  69. Jeffrey L. Boore7,23,24
  1. 1Center for Genomics and Bioinformatics, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.
  2. 2Department of Biology, Utah State University, 5305 Old Main Hill Road, Logan, UT 84322–5205, USA.
  3. 3Department of Biology, Indiana University, 1001 East Third Street, Bloomington, IN 47405, USA.
  4. 4Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Road, Durham, NH 03824, USA.
  5. 5Department of Ecology, Evolution, and Marine Biology, University of California–Santa Barbara, Santa Barbara, CA 93106, USA.
  6. 6Laboratory of Environmental and Molecular Biology, Environmental Sciences Division, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachiouji, Tokyo, 192-0392, Japan.
  7. 7Department of Energy Joint Genome Institute (JGI), 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.
  8. 8Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, Ludwig-Maximilians-Universität München, Germany.
  9. 9National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.
  10. 10School of Integrative Biology, University of Illinois, 515 Morril Hall, Urbana, IL 61801, USA.
  11. 11University of Geneva Medical School and Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland.
  12. 12Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, and Netherlands Proteomics Center, Utrecht University, Sorbonnelaan 16, 3584 CA, Utrecht, Netherlands.
  13. 13Department of Animal Science, University of California, Davis, Meyer Hall, One Shields Avenue, Davis, CA 95616, USA.
  14. 14Department of Biology II and GeoBio Center Munich, Ludwig-Maximilians-University Munich, Großhadernerstrasse 2, 82152 Planegg-Martinsried, Germany.
  15. 15Gene Expression, Roche NimbleGen Inc., 504 South Rosa Rd, Madison WI 53719, USA.
  16. 16Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.
  17. 17Department of Biology, University of Texas, Arlington, Box 19498, Arlington, TX 76019, USA.
  18. 18School of Informatics and Computing, Indiana University, Informatics Building, 901 East Tenth Street, Bloomington, IN 47408–3912, USA.
  19. 19School of Public and Environmental Affairs, Indiana University, 1315 East Tenth Street, Bloomington, IN 47405, USA.
  20. 20Department of Integrative Biology, University of Guelph, Guelph, Ontario N1G 2W1 Canada.
  21. 21Department of Entomology, University of Illinois at Urbana-Champaign, 505 South Goodwin Avenue, Urbana, IL 61801, USA.
  22. 22Imperial College London, South Kensington Campus, SW7 2AZ London, UK.
  23. 23Genome Project Solutions, 1024 Promenade Street, Hercules, CA 94547, USA.
  24. 24Department of Integrative Biology, University of California, Berkeley, CA 94720, USA.
  1. *To whom correspondence should be addressed. E-mail: jcolbour{at}indiana.edu
  • Present address: Department of Biological Sciences, University of Notre Dame, 109B Galvin Life Sciences, Notre Dame, IN 46556, USA.

  • Present address: J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

  • § Present address: Department of Genetics, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 91904, Israel.

  • ||Present address: Departments of Biological Sciences and Computer Science and Engineering, University of North Texas, Denton, TX 76203, USA.

  • Present address: Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

  • # Present address: Research Institute of Molecular Pathology (IMP), Dr. Bohr-Gasse 7, A-1030 Vienna, Austria.

  • ** Present address: Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA.

  • †† Present address: Genome Biology Unit, EMBL Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

  • ‡‡ Present address: Department of Biology and Roy J. Carver Center for Genomics, University of Iowa, Iowa City, IA 52242, USA.

  • §§ Present address: Laboratoire de Diagnostic Génétique, CHU Strasbourg Nouvel Hôpital Civil, 1 place de l’hôpital, 67000 Strasbourg, France, and IGBMC (Institut de Génétique et de Biologie Moléculaire et Cellulaire), CNRS/INSERM/Université de Strasbourg, 67404 Illkirch cedex, France.

  • ||||Present address: Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

  • ¶¶ Present address: Department of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.

  • ## Present address: Life Technologies Corporation, Foster City, CA 94404, USA.

  • *** Present address: Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, 333 East 38th Street, New York, NY 10016, USA.

  • ††† Present address: Department of Molecular Cancer Research, University Medical Center Utrecht, Utrecht University, Universiteitsweg 100, 3584 CG Utrecht, Netherlands.

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