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The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

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Science  20 May 2011:
Vol. 332, Issue 6032, pp. 960-963
DOI: 10.1126/science.1203810

Article Information

vol. 332 no. 6032 960-963

PubMed: 
Print ISSN: 
Online ISSN: 
History: 
  • Received for publication February 4, 2011
  • Accepted for publication April 8, 2011
  • .

Article Versions

Author Information

  1. Jo Ann Banks1,*,
  2. Tomoaki Nishiyama2,3,
  3. Mitsuyasu Hasebe3,4,5,
  4. John L. Bowman6,7,
  5. Michael Gribskov8,
  6. Claude dePamphilis9,10,11,
  7. Victor A. Albert12,
  8. Naoki Aono4,
  9. Tsuyoshi Aoyama4,5,
  10. Barbara A. Ambrose13,
  11. Neil W. Ashton14,
  12. Michael J. Axtell9,
  13. Elizabeth Barker14,
  14. Michael S. Barker15,
  15. Jeffrey L. Bennetzen16,
  16. Nicholas D. Bonawitz17,
  17. Clint Chapple17,
  18. Chaoyang Cheng3,
  19. Luiz Gustavo Guedes Correa18,
  20. Michael Dacre19,
  21. Jeremy DeBarry16,
  22. Ingo Dreyer20,
  23. Marek Elias21,22,
  24. Eric M. Engstrom23,
  25. Mark Estelle24,
  26. Liang Feng25,
  27. Cédric Finet26,
  28. Sandra K. Floyd6,
  29. Wolf B. Frommer27,
  30. Tomomichi Fujita28,
  31. Lydia Gramzow29,
  32. Michael Gutensohn30,31,
  33. Jesper Harholt32,
  34. Mitsuru Hattori33,34,
  35. Alexander Heyl35,
  36. Tadayoshi Hirai3,36,
  37. Yuji Hiwatashi4,5,
  38. Masaki Ishikawa3,
  39. Mineko Iwata3,
  40. Kenneth G. Karol13,
  41. Barbara Koehler18,
  42. Uener Kolukisaoglu37,38,
  43. Minoru Kubo3,
  44. Tetsuya Kurata3,39,
  45. Sylvie Lalonde27,
  46. Kejie Li8,
  47. Ying Li8,40,
  48. Amy Litt13,
  49. Eric Lyons41,
  50. Gerard Manning19,
  51. Takeshi Maruyama42,
  52. Todd P. Michael43,44,
  53. Koji Mikami45,
  54. Saori Miyazaki4,46,
  55. Shin‐ichi Morinaga4,47,
  56. Takashi Murata4,5,
  57. Bernd Mueller‐Roeber48,
  58. David R. Nelson49,
  59. Mari Obara3,50,
  60. Yasuko Oguri3,
  61. Richard G. Olmstead51,
  62. Naoko Onodera3,52,
  63. Bent Larsen Petersen32,
  64. Birgit Pils53,54,
  65. Michael Prigge24,
  66. Stefan A. Rensing55,56,57,
  67. Diego Mauricio Riaño-Pachón58,59,
  68. Alison W. Roberts60,
  69. Yoshikatsu Sato3,
  70. Henrik Vibe Scheller41,61,
  71. Burkhard Schulz30,
  72. Christian Schulz62,
  73. Eugene V. Shakirov63,
  74. Nakako Shibagaki64,
  75. Naoki Shinohara3,65,
  76. Dorothy E. Shippen63,
  77. Iben Sørensen32,66,
  78. Ryo Sotooka65,
  79. Nagisa Sugimoto3,
  80. Mamoru Sugita33,
  81. Naomi Sumikawa4,
  82. Milos Tanurdzic67,
  83. Günter Theißen29,
  84. Peter Ulvskov32,
  85. Sachiko Wakazuki3,
  86. Jing‐Ke Weng17,68,
  87. William W.G.T. Willats32,
  88. Daniel Wipf69,
  89. Paul G. Wolf70,
  90. Lixing Yang16,
  91. Andreas D. Zimmer55,71,
  92. Qihui Zhu16,
  93. Therese Mitros72,
  94. Uffe Hellsten73,
  95. Dominique Loqué61,
  96. Robert Otillar73,
  97. Asaf Salamov73,
  98. Jeremy Schmutz73,
  99. Harris Shapiro73,
  100. Erika Lindquist73,
  101. Susan Lucas73,
  102. Daniel Rokhsar72,73,
  103. Igor V. Grigoriev73
  1. 1Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA.
  2. 2Advanced Science Research Center, Kanazawa University, Kanazawa 920‐0934, Japan.
  3. 3ERATO, Japan Science and Technology Agency, Okazaki 444‐8585, Japan.
  4. 4National Institute for Basic Biology, Okazaki 444‐8585, Japan.
  5. 5Department of Basic Biology, School of Life Science, The Graduate University for Advanced Studies, Okazaki 444‐8585, Japan.
  6. 6School of Biological Sciences, Monash University, Clayton Campus, Melbourne, Victoria 3800, Australia.
  7. 7Section Plant Biology, University of California, Davis, CA 95616, USA.
  8. 8Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
  9. 9Department of Biology and Huck Institutes of Life Sciences, Pennsylvania State University, University Park, PA 16802, USA.
  10. 10Graduate Program in Plant Biology, Pennsylvania State University, University Park, PA 16802, USA.
  11. 11Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, PA 16802, USA.
  12. 12Department of Biological Sciences, University at Buffalo, Buffalo, NY 14260, USA.
  13. 13The New York Botanical Garden, Bronx, NY 10458, USA.
  14. 14Department of Biology, University of Regina, 3737 Wascana Parkway, Regina, SK S4S 0A2, Canada.
  15. 15Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.
  16. 16Department of Genetics, University of Georgia, Athens, GA 30602, USA.
  17. 17Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA.
  18. 18Department of Molecular Biology, University of Potsdam, Potsdam‐Golm 14476, Germany.
  19. 19Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
  20. 20Heisenberg‐Group Biophysics and Molecular Plant Biology, University of Potsdam, Potsdam-Golm 14476, Germany.
  21. 21Charles University in Prague, Faculty of Science, Department of Botany, 128 01 Prague 2, Benatska 2, Czech Republic.
  22. 22University in Prague, Faculty of Science, Chittussiho 10, 710 00 Ostrava, Czech Republic.
  23. 23Department of Biology, The College of William and Mary, Williamsburg, VA 23187, USA.
  24. 24Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA 92093, USA.
  25. 25Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
  26. 26Laboratoire de Reproduction et Développement des Plantes, Ecole Normale Supérieure de Lyon, Lyon F‐69364, France.
  27. 27Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA.
  28. 28Faculty of Science, Hokkaido University, Sapporo 060‐0810, Japan.
  29. 29Department of Genetics, Friedrich Schiller University Jena, D‐07743 Jena, Germany.
  30. 30Department of Horticulture and Landscape Architecture, Purdue University, W. Lafayette, IN 47907, USA.
  31. 31Institute of Biology, Martin Luther University Halle-Wittenberg, Halle/Saale 06120, Germany.
  32. 32Department of Plant Biology and Biotechnology, University of Copenhagen, Frederiksberg C 1871, Denmark.
  33. 33Center for Gene Research, Nagoya University, Nagoya 464‐8602, Japan.
  34. 34Department of Chemistry, School of Science, The University of Tokyo 7‐3‐1 Hongo, Bunkyo‐ku, Tokyo 113‐0033, Japan.
  35. 35Institute for Biology–Applied Genetics, Dahlem Centre of Plant Sciences, Freie Universität Berlin, 14195 Berlin, Germany.
  36. 36Graduate School of Life and Environmental Sciences, Gene Research Center, University of Tsukuba, Tsukuba 305‐8572, Japan.
  37. 37Center for Life Science Automation, University of Rostock, D-18119 Rostock, Germany.
  38. 38Studiengangskoordination Nano-Science, Universität Tübingen, Tübingen 72076, Germany.
  39. 39Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Nara 630‐0192, Japan.
  40. 40Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
  41. 41Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.
  42. 42Graduate School of Life Science, Hokkaido University, Sapporo 060‐0810, Japan.
  43. 43Department of Plant Biology and Pathology, Rutgers, The State University of New Jersey and Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854–8020, USA.
  44. 44The Genome Analysis Center, Monsanto, St. Louis, MO 63167, USA.
  45. 45Faculty of Fisheries Sciences, Hokkaido University, Hakodate 041‐8611, Japan.
  46. 46National Institute of Genetics, Mishima 411‐8540, Japan.
  47. 47Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153‐8902, Japan.
  48. 48Bernd Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany.
  49. 49Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN 38163, USA.
  50. 50Japan Science and Technology Agency, Sapporo 060‐0819, Japan.
  51. 51Department of Biology, University of Washington, Seattle, WA 98195–5325, USA.
  52. 52Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada.
  53. 53Wellcome Trust Centre for Human Genetics, Oxford, OX3 7BN, UK.
  54. 54Sias AG, CH-8634 Hombrechtikon, Switzerland.
  55. 55Faculty of Biology, University of Freiburg, Freiburg 79104, Germany.
  56. 56BIOSS Centre for Biological Signaling Studies, University of Freiburg, Freiburg 79104, Germany.
  57. 57Freiburg Initiative for Systems Biology (FRISYS), University of Freiburg, Freiburg 79104, Germany.
  58. 58GabiPD team, Bioinformatics Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany.
  59. 59Departamento de Ciencias Biológicas, Universidad de los Andes, Bogotá D.C., Colombia.
  60. 60Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA.
  61. 61Joint BioEnergy Institute, Feedstocks Division, Emeryville, CA 94608, USA.
  62. 62Department of Evolution and Biodiversity of Plants, Ruhr‐University Bochum, Bochum 44780, Germany.
  63. 63Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
  64. 64Graduate School of Engineering, Osaka University, Osaka 565‐0871, Japan.
  65. 65School of Science, Hokkaido University, Sapporo 060‐0810, Japan.
  66. 66Department of Plant Biology, Cornell University, Ithaca, NY 14850, USA.
  67. 67Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  68. 68The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
  69. 69UMR INRA 1088/CNRS 5184, Université Bourgogne Plant‐Microbe‐Environment, Dijon 21065, France.
  70. 70Department of Biology, Utah State University, Logan, UT 84322‐5305, USA.
  71. 71Plant Biotechnology, University of Freiburg, Freiburg 79104, Germany.
  72. 72Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
  73. 73U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA.
  1. *To whom correspondence should be addressed. E-mail: banksj{at}purdue.edu

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