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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

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Science  05 Sep 2014:
Vol. 345, Issue 6201, pp. 1181-1184
DOI: 10.1126/science.1255274

Article Information

vol. 345 no. 6201 1181-1184

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History: 
  • Received for publication April 28, 2014
  • Accepted for publication July 29, 2014
  • .

Author Information

  1. France Denoeud1,2,3,
  2. Lorenzo Carretero-Paulet4,
  3. Alexis Dereeper5,
  4. Gaëtan Droc6,
  5. Romain Guyot7,
  6. Marco Pietrella8,
  7. Chunfang Zheng9,
  8. Adriana Alberti1,
  9. François Anthony5,
  10. Giuseppe Aprea8,
  11. Jean-Marc Aury1,
  12. Pascal Bento1,
  13. Maria Bernard1,
  14. Stéphanie Bocs6,
  15. Claudine Campa7,
  16. Alberto Cenci5,10,
  17. Marie-Christine Combes5,
  18. Dominique Crouzillat11,
  19. Corinne Da Silva1,
  20. Loretta Daddiego12,
  21. Fabien De Bellis6,
  22. Stéphane Dussert7,
  23. Olivier Garsmeur6,
  24. Thomas Gayraud7,
  25. Valentin Guignon10,
  26. Katharina Jahn9,13,14,
  27. Véronique Jamilloux15,
  28. Thierry Joët7,
  29. Karine Labadie1,
  30. Tianying Lan4,16,
  31. Julie Leclercq6,
  32. Maud Lepelley11,
  33. Thierry Leroy6,
  34. Lei-Ting Li17,
  35. Pablo Librado18,
  36. Loredana Lopez12,
  37. Adriana Muñoz19,20,
  38. Benjamin Noel1,
  39. Alberto Pallavicini21,
  40. Gaetano Perrotta12,
  41. Valérie Poncet7,
  42. David Pot6,
  43. Priyono22,
  44. Michel Rigoreau11,
  45. Mathieu Rouard10,
  46. Julio Rozas18,
  47. Christine Tranchant-Dubreuil7,
  48. Robert VanBuren17,
  49. Qiong Zhang17,
  50. Alan C. Andrade23,
  51. Xavier Argout6,
  52. Benoît Bertrand24,
  53. Alexandre de Kochko7,
  54. Giorgio Graziosi21,25,
  55. Robert J Henry26,
  56. Jayarama27,
  57. Ray Ming17,
  58. Chifumi Nagai28,
  59. Steve Rounsley29,
  60. David Sankoff9,
  61. Giovanni Giuliano8,
  62. Victor A. Albert4,*,
  63. Patrick Wincker1,2,3,*,
  64. Philippe Lashermes5,*
  1. 1Commissariat à l’Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.
  2. 2CNRS, UMR 8030, CP5706, Evry, France.
  3. 3Université d’Evry, UMR 8030, CP5706, Evry, France.
  4. 4Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA.
  5. 5Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.
  6. 6CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.
  7. 7IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.
  8. 8Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.
  9. 9Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.
  10. 10Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.
  11. 11Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d’Oé, BP 49716, 37097 Tours Cedex 2, France.
  12. 12ENEA Trisaia Research Center, 75026 Rotondella, Italy.
  13. 13Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany.
  14. 14AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld, Germany.
  15. 15Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex, France.
  16. 16Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing, China.
  17. 17Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
  18. 18Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.
  19. 19Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA.
  20. 20School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.
  21. 21Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy.
  22. 22Indonesian Coffee and Cocoa Institute, Jember, East Java, Indonesia.
  23. 23Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917, Brazil.
  24. 24CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.
  25. 25DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste, Italy.
  26. 26Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072, Australia.
  27. 27Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State, India.
  28. 28Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100, USA.
  29. 29BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721, USA.
  1. *Corresponding author. E-mail: vaalbert{at}buffalo.edu (V.A.A.); pwincker{at}genoscope.cns.fr (P.W.); philippe.lashermes{at}ird.fr (P.L.)

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