Supplementary Materials

The sheep genome illuminates biology of the rumen and lipid metabolism

Yu Jiang, Min Xie, Wenbin Chen, Richard Talbot, Jillian F. Maddox, Thomas Faraut, Chunhua Wu, Donna M. Muzny, Yuxiang Li, Wenguang Zhang, Jo-Ann Stanton, Rudiger Brauning, Wesley C. Barris, Thibaut Hourlier, Bronwen L. Aken, Stephen M. J. Searle, David L. Adelson, Chao Bian, Graham R. Cam, Yulin Chen, Shifeng Cheng, Udaya DeSilva, Karen Dixen, Yang Dong, Guangyi Fan, Ian R. Franklin, Shaoyin Fu, Pablo Fuentes-Utrilla, Rui Guan, Margaret A. Highland, Michael E. Holder, Guodong Huang, Aaron B. Ingham, Shalini N. Jhangiani, Divya Kalra, Christie L. Kovar, Sandra L. Lee, Weiqing Liu, Xin Liu, Changxin Lu, Tian Lv, Tittu Mathew, Sean McWilliam, Moira Menzies, Shengkai Pan, David Robelin, Bertrand Servin, David Townley, Wenliang Wang, Bin Wei, Stephen N. White, Xinhua Yang, Chen Ye, Yaojing Yue, Peng Zeng, Qing Zhou, Jacob B. Hansen, Karsten Kristiansen, Richard A. Gibbs, Paul Flicek, Christopher C. Warkup, Huw E. Jones, V. Hutton Oddy, Frank W. Nicholas, John C. McEwan, James W. Kijas, Jun Wang, Kim C. Worley, Alan L. Archibald, Noelle Cockett, Xun Xu, Wen Wang, Brian P. Dalrymple

Materials/Methods, Supplementary Text, Tables, Figures, and/or References

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  • Materials and Methods
  • Supplementary Text
  • Figs. S1 to S10, S12 to S33
  • Tables S1, S4, S8, S12 to S24, S27
Fig S11
Robust sheep RH map versus the Oar v3.1 assembly.
Table S2
Sheep linkage map SM5.
Table S3
Robust sheep RH map.
Table S5
List of segmental duplications.
Table S6
Breakpoints between the sheep Oar v3.1 and cattle UMD3 assemblies defined by BACs.
Table S7
List of tissue samples used to generate the RNA-Seq data used in the Ensembl annotation.
Table S9
Gene family expansions in ruminants.
Table S10
EDC region gene annotation sheep.
Table S11
Lipid gene expression in sheep skin.
Table S25
Gene name to Ensembl gene id translation.
Table S26
Genes with allele specific gene expression.