Supplementary Materials
Sadia Saeed, Jessica Quintin, Hindrik H. D. Kerstens, Nagesha A. Rao, Ali Aghajanirefah, Filomena Matarese, Shih-Chin Cheng, Jacqueline Ratter, Kim Berentsen, Martijn A. van der Ent, Nilofar Sharifi, Eva M. Janssen-Megens, Menno Ter Huurne, Amit Mandoli, Tom van Schaik, Aylwin Ng, Frances Burden, Kate Downes, Mattia Frontini, Vinod Kumar, Evangelos J. Giamarellos-Bourboulis, Willem H. Ouwehand, Jos W. M. van der Meer, Leo A. B. Joosten, Cisca Wijmenga, Joost H. A. Martens, Ramnik J. Xavier, Colin Logie, Mihai G. Netea, Hendrik G. Stunnenberg
Materials/Methods, Supplementary Text, Tables, Figures, and/or References
- Materials and Methods
- Figs. S1 to S9
- References
- List of genes that are differentially expressed during monocyte (Mo) to macrophages (Mf) differentiation (Fig. 1J).
- Extended list of gene ontology terms associated with differentially expressed genes during monocyte (Mo) to macrophage (Mf) differentiation (Fig 1J) and genes assigned to the expression modules M1-6 (Fig. 3B).
- List of genomic loci associated with each epigenomic clusters (Fig. 2A-B, Fig S2A-B).
- List of genes that fit into differential expression models and that are assigned to expression modules (Fig. 3A).
- List of the 1581 human DNA sequence-specific transcription factors used in this study (Fig. 4A).
- List of transcription factor motifs that are enriched in dynamic distal regulatory elements (ACe, Fig. 4D).