Supplementary Materials

Regulatory evolution of innate immunity through co-option of endogenous retroviruses

Edward B. Chuong, Nels C. Elde, C├ędric Feschotte

Materials/Methods, Supplementary Text, Tables, Figures, and/or References

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  • Materials and Methods
  • Figs. S1 to S11
  • Captions for tables S1 to S6
  • References
Table S1
TE enrichment analyses for human and mouse ChIP-Seq datasets.
Table S2
Analysis of STAT1/IRF1-bound ERVs and IFNG-stimulated genes in primary CD14+ macrophages.
Table S3
List of MER41 and RLTR30B repeats bound by TFs and their closest gene.
Table S4
BLAST analysis of presence/absence of MER41-like elements across mammalian species representative of each major eutherian lineage.
Table S5
Uniformly analyzed ChIP-Seq peaks used in this study.
Table S6
Sequences used in this study (CRISPR-Cas9 gRNAs, qPCR and genotyping primers, synthesized LTR promoters).