Supplementary Materials

Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom

John K. Brunson, Shaun M. K. McKinnie, Jonathan R. Chekan John P. McCrow, Zachary D. Miles, Erin M. Bertrand, Vincent A. Bielinski, Hanna Luhavaya, Miroslav ObornĂ­k, G. Jason Smith, David A. Hutchins, Andrew E. Allen, Bradley S. Moore

Materials/Methods, Supplementary Text, Tables, Figures, and/or References

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  • Materials and Methods
  • Supplementary Text
  • Figs. S1 to S19
  • References
Table S1
Table showing RPKM, annotation, TMM values for edgeR, and edgeR differential expression (DE) analysis for all 19704 P. multiseries transcripts under the nutritional conditions described in this manuscript and a previous publication (19). Libraries prepared with either Ribo-Zero Magnetic kits (Illumina) or TruSeq RNA Sample Preparation Kit (Illumina) are labeled as "rRNA" or "truseq" respectively.
Table S2
Table showing RPKM, annotation, TMM values for edgeR, and edgeR differential expression (DE) analysis for P. multiserieis transcripts upregulated under phosphate starvation. Expression data (RPKM, TMM) is also shown for all of the nutritional conditions described in this manuscript and a previous publication (19). Libraries prepared with either Ribo-Zero Magnetic kits (Illumina) or TruSeq RNA Sample Preparation Kit (Illumina) are labeled as "rRNA" or "truseq" respectively.
Table S3
Table showing RPKM, annotation, TMM values for edgeR, and edgeR differential expression (DE) analysis for P. multiserieis transcripts upregulated under phosphate starvation and under increasing pCO2 with constant low phosphate. Expression data (RPKM, TMM) is also shown for all of the nutritional conditions described in this manuscript and a previous publication (19). Libraries prepared with either Ribo-Zero Magnetic kits (Illumina) or TruSeq RNA Sample Preparation Kit (Illumina) are labeled as "rRNA" or "truseq" respectively.
Table S4
Table showing RPKM, annotation, TMM values for edgeR, and edgeR differential expression (DE) analysis for all CYP450 annotated transcripts. Expression data (RPKM, TMM) is shown for all of the nutritional conditions described in this manuscript and a previous publication (19). Libraries prepared with either Ribo-Zero Magnetic kits (Illumina) or TruSeq RNA Sample Preparation Kit (Illumina) are labeled as "rRNA" or "truseq" respectively.