Supplementary Materials

Gene regulatory networks controlling vertebrate retinal regeneration

Thanh Hoang, Jie Wang, Patrick Boyd, Fang Wang, Clayton Santiago, Lizhi Jiang, Sooyeon Yoo, Manuela Lahne, Levi J. Todd, Meng Jia, Cristian Saez, Casey Keuthan, Isabella Palazzo, Natalie Squires, Warren A. Campbell, Fatemeh Rajaii, Trisha Parayil, Vickie Trinh, Dong Won Kim, Guohua Wang, Leah J. Campbell, John Ash, Andy J. Fischer, David R. Hyde, Jiang Qian, Seth Blackshaw

Materials/Methods, Supplementary Text, Tables, Figures, and/or References

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  • Figs. S1 to S17
  • Captions for Tables S1 to S14
Table S1
Information on all samples measured by RNA-Seq, ATAC-Seq and scRNA-Seq.
Table S2
List of genes specifically expressed in GFP+ and GFP- samples.
Table S3
List of genes changed at bulk expression pattern or level in Müller glia.
Table S4
List of known marker genes for retinal cell types.
Table S5
Marker genes of retinal cell types from mouse, chick and zebrafish.
Table S6
List of genes changed at single-cell expression pattern or level in Müller glia.
Table S7
Differentially accessible chromatin regions in zebrafish and mouse Müller glia.
Table S8
Gene list of ten modules in zebrafish and mouse Müller glia.
Table S9
Regulatory network of candidate genes in zebrafish and mouse Müller glia.
Table S10
Regulatory network of enriched regulators in zebrafish and mouse Müller glia.
Table S11
Features of enriched regulators in zebrafish and mouse Müller glia.
Table S12
List of antibodies used in the study.
Table S13
List of qPCR primers and RNA probes used in the study.
Table S14
List of genes used for RNA velocity analysis.
MDAR Reproducibility Checklist