Table 4

The 10 InterPro protein domains occurring in the largest number of different proteins in S. cerevisiae andC. elegans.

Acc. no.InterPro domain nameNo. of proteins
S. cerevisiae
IPR000719 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000719 Eukaryotic protein kinase119
IPR001680 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001680 G-protein beta WD-40 repeats90
IPR001650 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001650 DNA/RNA helicase domain (DEAD/DEAH box)75
IPR001138 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001138 Fungal transcriptional regulatory protein, N-terminus60
IPR001042 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001042 TYA transposon protein57
IPR000504 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000504 RNA-binding region RNP-1 (RNA recognition motif)55
IPR001410 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001410 DEAD/DEAH box helicase48
IPR000822 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000822 Zinc finger, C2H2 type47
IPR001066 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001066 Sugar transporter46
IPR001969 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001969 Eukaryotic and viral aspartyl proteases active site42
C. elegans
IPR000168 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000168 7-Helix G-protein coupled receptor, nematode (probably olfactory) family545
IPR000694 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000694 Proline-rich region398
IPR000719 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000719 Eukaryotic protein kinase388
IPR002356 http://apus.ebi.ac.uk:8080/interpro/entry/IPR002356 G-protein–coupled receptors, rhodopsin family335
IPR001628 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001628 C4-type steroid receptor zinc finger224
IPR001810 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001810 F-box domain215
IPR000087 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000087 Collagen triple helix repeat166
IPR001304 http://apus.ebi.ac.uk:8080/interpro/entry/IPR001304 C-type lectin domain165
IPR002900 http://apus.ebi.ac.uk:8080/interpro/entry/IPR002900 Domain of unknown function142
IPR000822 http://apus.ebi.ac.uk:8080/interpro/entry/IPR000822 Zinc finger, C2H2 type138