Table 10

Features of the chromosomes. De novo/any refers to the union of de novo predictions that do not overlap Otto predictions and have at least one other type of supporting evidence; de novo/2x refers to the union of de novo predictions that do not overlap Otto predictions and have at least two types of evidence. Deserts are regions of sequence with no annotated genes.

Chr.Sequence coverage (CS assembly)Base compositionGene prediction*Gene density (genes/Mbp)
Size (Mbp)No. of scaf- foldsLargest scaf- fold (Mbp)No. of scaf- folds >500 kbpSe- quence covered by scaf- folds >500 kbp% of total se- quence in scaf-folds >500 kbp% repeat% GCNo of CpG islandsOttoDe novo/anyDe novo/2×Total (Otto + de novo/any)Total (Otto + de novo/any)Se- quence in deserts >500/kbp Se- quence in deserts >1 Mbp Otto De novo/ anyDe novo/2× Otto + de novo/ any Otto + de novo/ 2×
 12202,54911821928837422,3351,7431,7107103,4532,4532968831611
 22403,26313782179136401,7031,1831,7716332,9541,8165519572127
 32003,5327781738737401,2711,0131,4145982,4271,6115012573128
 41862,18010701699137381,0816961,1654491,8611,1455518462106
 51823,23111631638937401,3028921,2444742,1361,3664615572117
 61721,71313581609337401,3849431,3145242,2571,467389673138
 71461,32614531308938401,4067591,0724601,8311,2192612573128
 81461,77211541359236409485839773571,560940336472116
 91131,6168401018938411,3156898483291,5371,018229673138
101302,0059551168936421,0876859683421,6531,027218572127
111322,8149441168839421,4611,0511,1345352,1851,5862798841612
121342,6148511178738411,1319259364171,8611,3422497731410
13991,0381334919136386443416912411,0325823116472105
14875761116839540419135837002901,28387334207831410
15801,747831708737427225586402461,198804817831510
16751,520827628240441,5337486732471,42199513310931912
17781,683640617839451,4898976483131,5451,21015612841915
18791,3331318729236405102835431898264722110472106
19582,282331386757492,8041,1415342681,6751,4093020942923
2061580141758944144997517469180986697718731611
213335810632963841519184265102449286159683138
22363331112328844481,1734943411478356413014942317
X1281,346491937346397266058603871,465992298563117
Y196382101265503965551554921010442382115
U* 7511,5421479196278132474328
Total290753,5911,0592,49028,51917,76421,3508,61939,11426,383606208
Avg.1162,1449441048740411,1607148123331,5261,047259773149
  • * Chromosomal assignment unknown.