Table 1 Species composition of the sequenced arrayed culture collections from six donors.

Alternative names for species are in parentheses.

Species IDSpeciesDonor
F3T1F58T1F60T1F60T2F61T1F61T2
1Alistipes indistinctus++
2Anaerococcus vaginalis (A. hydrogenalis)++++
3Anaerofustis stercorihominis++
4Anaerofustis stercorihominis+
5Bacteroides+
6Bacteroides caccae+++
7Bacteroides finegoldii++
8Bacteroides fragilis++
9Bacteroides intestinalis (B. cellulosilyticus)++++
10Bacteroides massiliensis++
11Bacteroides ovatus++++
12Bacteroides salyersiae+
13Bacteroides thetaiotaomicron (B. faecis)++++
14Bacteroides uniformis (B. acidifaciens)++++
15Bacteroides vulgatus (B. dorei)++++++
16Barnesiella intestinihominis+
17Bifidobacterium adolescentis++
18Bifidobacterium bifidum+
19Bifidobacterium longum+++
20Bifidobacterium pseudocatenulatum++
21Blautia+
22Blautia schinkii++
23Butyricimonas virosa++++
24Clostridiales+
25Clostridiales+
26Clostridiales+
27Clostridiales+
28Clostridiales+
29Clostridiales+
30Clostridiales+
31Clostridium+++
32Clostridium+
33Clostridium bolteae+
34Clostridium hylemonae+
35Clostridium leptum++
36Clostridium scindens++
37Clostridium scindens+
38Collinsella+
39Collinsella aerofaciens+++
40Coprococcus comes+++
41Dorea formicigenerans++++
42Dorea longicatena++++
43Dorea longicatena+
44Eggerthella lenta (Subdoligranulum variabile)+
45Escherichia coli+++++
46Eubacterium biforme+
47Eubacterium callanderi+
48Eubacterium contortum+
49Eubacterium eligens+
50Finegoldia magna (Dialister invisus)+
51Lactobacillus+
52Lactobacillus casei+
53Megasphaera elsdenii+
54Odoribacter splanchnicus+++
55Parabacteroides distasonis+++++
56Parabacteroides goldsteinii++
57Parabacteroides merdae++
58Peptoniphilus harei++
59Roseburia intestinalis+
60Ruminococcaceae+
61Ruminococcus (Lachnospiraceae)++
62Ruminococcus albus+
63Ruminococcus bromii++
64Ruminococcus gauvreauii+
65Ruminococcus gnavus+++
66Ruminococcus obeum+
67Ruminococcus sp. CCUG 37327 A++
68Ruminococcus sp. DJF VR70k1+
69Ruminococcus torques++
70Streptococcus+
71Streptococcus gordonii+
72Streptococcus parasanguinis+
73Streptococcus thermophilus+
74Subdoligranulum variabile+++++
75Veillonella parvula+