Table 3 Sequencing, assembly, and GenomeZipper statistics for wheat D genome chromosome arms.

Sequence indicates the total assembled sequence (>200 bp); number of contigs is after filtering of highly repetitive sequence assemblies; syntenic loci is the number of gene loci anchored to reference gene; and the last row is the number of total anchored gene loci.

1DS1DL2DS2DL3DS3DL4DS4DL5DS5DL6DS6DL7DS7DL
Assembly
Chromosome size (Mbp)2243813174123214502324172594913243893813474,937
Sequence (Mbp) 128,2254,4166261.6145.4186.5142.1347.6148236.8156.6199.8209.1222.92,805
Coverage (x-fold)0.570.670.520.630.450.410.610.830.570.480.480.510.550.640.57
L50 (bp)2,85025611241701515967327810132,3532,6474,2972,0771,9673,638
Repeat
No. of contigs17,72535,77043,044110,44646,79569,25918,245197,39822,44934,62216,07726,23636,70126,737701,504
L506,6226,2974,6353,2471,697294174281855594570498,9046,8215,0317,399
GenomeZipper
No. of markers2586534577393796332694982257442974115795156,657
No. of wheat fl-cDNAs89251177323128244130255993751032082002122,794
No. of nonred. contigs9682,7973,0235,8042,9333,7121,2313,1748903,4369731,9233,0062,08335,953
No. of syntenic gene loci4741,4831,1972,1417991,5757791,2774542,0735381,1171,2221,09916,228
No. of anchored gene loci6421,8821,4752,5421,0511,9239121,5825982,4827581,3471,5921,42320,209
POP-Seq Anchoring
No. of contigs7,68624,14924,65231,35926,44737,87414,19823,84214,45829,60418,70123,76341,79631,832350,361
No. of anchored gene loci6181,2571,4081,9037691,4697781,1166782,4329951,4581,4051,71117,997