Table 2 Gorilla genome structural variants.

Contigs greater than 200 kbp were mapped to GRCh38 by using BLASR (30). Nonrepetitive sequences contained at most 70% of sequence annotated as repeat by RepeatMasker (3.3.0) (28) or Tandem Repeats Finder 4.07b (29). Mosaic repeats are defined as one or more different repeat annotations; however, mosaic structural variants composed solely of Alu are listed separately because of their frequency.

InsertionDeletion
Repeat
element
CountFixedAverage
length
(bp)
Standard
deviation
length
(bp)
Total basesCountFixedAverage
length
(bp)
Standard
deviation
length
(bp)
Total bases
Complex, not repetitive15,38313,190709.311807.291091128413,74910,250763.171,95410492765
Complex, repetitive7,5527,2432716.962746.6320,518,4847,4505,9342757.392906.6120,542,529
AluY6,4185,878284.3665.21,825,0129,4227,882294.5860.042,775,515
AluS990950160.6485.98159,0361,053845159.8482.05168,315
L1Hs8650262.67582.3722,590220179235.51358.9351,813
L11,3391,256438.5737.1587,1471,181874450.84744.1532,441
L1P1,8911,660278.26487.86526,1921,4301,098312.81493.88447,317
SVA1,4981,0971561.21007.552,338,6721,1947861279.32914.181,527,511
HERV324285241.06498.0978,104260194362.79797.494,325
PTERV1901792973.223427564,912111880188
Mosaic-Alu1,4331,355320.11262.59458,7171,5141,177307.92260.53466,194
STR11,0494,152228.73313.352,527,25710,5644,573156.93175.961,657,802
Tandem Repeats7,3514,520367.74811.032,703,2617,8284,225323.38558.52,531,424
Satellite1,7571,613437.461072.08768,6171,7681,437426.731047.71754,455
Other1,3191,184201.01247.8265,1301,196896180.49227.79215,872
Not base-pair resolved41N/A49,49623817.46202932361N/A55,97143,4963,414,209
Total58,62144,653789.542183.4346,283,73858,89140,482775.552804.2145,672,675